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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009106943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 309aa MW: 33888.1 Da PI: 9.0905 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.2 | 1.2e-14 | 78 | 160 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Li+a ++ + ++g lk+++W ev++ + + +++++ +qCk++++ ++k+yk++k+ ++ s++++f++le XP_009106943.1 78 CWSEEATRVLINAWGDRFAEPGKGTLKQQQWHEVAEIVngsGQCKYTKTDVQCKNRIDTVKKKYKQEKAKKGP------SKWAFFKKLE 160 7*************************************88888889**********************99996......58******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-23 | 77 | 162 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MEEEDETQSS PVDSSSPPAP SSPPVLPASN VTVASVTKPP PSSQSPSRNA LALAVHTPSV 60 TVNKNGRIGG GGGGRDDCWS EEATRVLINA WGDRFAEPGK GTLKQQQWHE VAEIVNGSGQ 120 CKYTKTDVQC KNRIDTVKKK YKQEKAKKGP SKWAFFKKLE SLIGGGGGGK APVVGARSSG 180 PMRWHFRKRS ASETESESEP EHSAESLPPP LQPLPKRLKM GESGVGEVAK AILGFTEAYE 240 KAESGKIKLM LELEKERMKF VKEMELQRMQ FLRTQMEITQ KNQEEERGKL RINDDDDDRN 300 VKNNGDVSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.11593 | 1e-163 | flower| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ973845 | 4e-70 | DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106943.1 | 0.0 | PREDICTED: uncharacterized protein LOC103832636 isoform X2 | ||||
Swissprot | Q9SYG2 | 1e-124 | ASIL1_ARATH; Trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A078JAZ0 | 1e-168 | A0A078JAZ0_BRANA; BnaC03g78260D protein | ||||
STRING | AT1G54060.1 | 1e-121 | (Arabidopsis thaliana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54060.1 | 1e-87 | 6B-interacting protein 1-like 1 |