PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009106943.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 309aa    MW: 33888.1 Da    PI: 9.0905
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009106943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-1478160186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ +++Li+a  ++  + ++g lk+++W ev++ +    + +++++ +qCk++++ ++k+yk++k+ ++       s++++f++le
  XP_009106943.1  78 CWSEEATRVLINAWGDRFAEPGKGTLKQQQWHEVAEIVngsGQCKYTKTDVQCKNRIDTVKKKYKQEKAKKGP------SKWAFFKKLE 160
                     7*************************************88888889**********************99996......58******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2377162No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEEEDETQSS PVDSSSPPAP SSPPVLPASN VTVASVTKPP PSSQSPSRNA LALAVHTPSV  60
TVNKNGRIGG GGGGRDDCWS EEATRVLINA WGDRFAEPGK GTLKQQQWHE VAEIVNGSGQ  120
CKYTKTDVQC KNRIDTVKKK YKQEKAKKGP SKWAFFKKLE SLIGGGGGGK APVVGARSSG  180
PMRWHFRKRS ASETESESEP EHSAESLPPP LQPLPKRLKM GESGVGEVAK AILGFTEAYE  240
KAESGKIKLM LELEKERMKF VKEMELQRMQ FLRTQMEITQ KNQEEERGKL RINDDDDDRN  300
VKNNGDVSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.115931e-163flower| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9738454e-70DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106943.10.0PREDICTED: uncharacterized protein LOC103832636 isoform X2
SwissprotQ9SYG21e-124ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A078JAZ01e-168A0A078JAZ0_BRANA; BnaC03g78260D protein
STRINGAT1G54060.11e-121(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.11e-876B-interacting protein 1-like 1